I feel than an alligator clip across the terminals would be vulnerable, plus the terminals are scorched so not sure I could appropriate voltage flow vs. just pulling the wires out of the back of the fuse panel and jumpering them.
I dunno...maybe I'm over thinking it.
Vulnerable? The alligator clips are just for a test. If you kick it loose during your test drive, you will stall the car. If this is possible, don't drive it anywhere that way.
You said the fuse terminals were scorched and a little warm. If they are visibly scorched, they got more than a little warm - they got very hot.
On the other hand, you said the fuel injection relay was warm. It is warm normally. The coil in each of the two relays dissipates enough heat to raise the temp of the relay box above comfortable handling.
As for making the in-line fuse repair, your plan sounds OK to me, although I might build it a bit differently depending on what I find in there. There are spare tabs on that fuseholder, and #6 has a common supply with other fuses, so I might just plug that pigtail assembly on the spare tabs instead of butchering the harness. Depends on what it looks like, and whether the harness could stand a little trimming. For you, it might depend on what tools, materials, and skills you have.
Tell you what: We have two 91's both over 300K and they are daily drivers for my daughters. Both cars have exhibited this fuse 6 syndrome in the past. My most recent fix was short of what I recommended -- I just cleaned the fuse panel, retensioned the terminals, and used copper (similar metal) fuses.
My kids are familiar with the good advice JohnMc offers 240 owners about rolling fuses. My assumption is all 240 owners have learned this over the years. But of late, since the replacement with copper fuses, they haven't mentioned needing to tweak that #6 in the morning to get things going.
Next opportunity, I will take my own advice about the bypass pigtail, photograph its installation, and post it in this thread. Stay tuned and you'll have the step-by-step, but meanwhile you'll have to listen to your own sensibilities.